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The `ManifestCache::applyManifest` function was returning early without incrementing `seq_`. `OverlayImpl `uses this sequence to identify/invalidate a cached `TMManifests` message, which is exchanged with peers on connection. Depending on network size, startup sequencing, and topology, this can cause syncing issues. This change therefore increments `seq_` when a new manifest is accepted.
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Each folder contains a single module following the newest style:
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- As much implementation hidden as possible
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